About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_50144710_50149155_R

Intron Information:

Intron Rank:
151675
Intron Class:
major
Intron Phase:
Intron Coordinates:
50144710 - 50149155
Intron Length:
4446

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTATTTATG
5'SS Class:
major
3'SS Sequence:
TTTCTCTCATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTCTCTCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.5
0.46
1.1
67.2
43.7
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
78.4
0.64
0.8
79.1
28.1
Minor 5ss
45.1
-0.5
2.5
51.3
45.3
Minor BPS
58.1
0.34
2
84.17
37.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029144
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026779
50144651 - 50152656
8006