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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_50165728_50168001_R

Intron Information:

Intron Rank:
129198
Intron Class:
major
Intron Phase:
Intron Coordinates:
50165728 - 50168001
Intron Length:
2274

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTAAGTATG
5'SS Class:
major
3'SS Sequence:
TTTTACCCTGAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TCTTGCTAAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1.1
74.7
41.5
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
72.9
0.52
1
73
31.9
Minor 5ss
41.3
-1
2.8
52.3
44.3
Minor BPS
62.6
0.47
2.1
83.33
44.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016705
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033876
50158327 - 50172685
14359
ENSAPLT00000026996
50158327 - 50172685
14359