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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_50171846_50172517_R

Intron Information:

Intron Rank:
129200
Intron Class:
major
Intron Phase:
Intron Coordinates:
50171846 - 50172517
Intron Length:
672

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTACCATT
5'SS Class:
major
3'SS Sequence:
TTTCTTTTAATAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TTTCTTTTAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.3
0.41
1.3
73.9
42.7
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
83
0.74
0.8
81.2
29.3
Minor 5ss
47.2
-0.3
2.7
67.3
43.5
Minor BPS
74.7
0.77
1.1
80
29.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016705
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026996
50158327 - 50172685
14359