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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_50183606_50184501_F

Intron Information:

Intron Rank:
137950
Intron Class:
major
Intron Phase:
Intron Coordinates:
50183606 - 50184501
Intron Length:
896

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGAGCT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTCTTTAAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATACAT
U12 Branch Point Sequence:
TTTTCCTTATAC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
72.5
37.3
Major BPS
74.9
0.62
1
81.3
29.9
Major PPT
82.1
0.72
0.9
87
24.2
Minor 5ss
31.7
-2.1
3.6
47.8
47.9
Minor BPS
73
0.7
1.7
83.92
35.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024253
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021128
50181951 - 50184772
2822