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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_50212975_50221492_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
50212975 - 50221492
Intron Length:
8518

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
GTTCCTTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
TGTCTCTGATTT
Flanking Amino Acid:
FPYLCQKNGGGAYLVPYLIL
Intron Amino Acid Position:
97

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.2
1.11
0.7
90.9
28.7
Major BPS
79
0.72
1
69
38.9
Major PPT
81.6
0.71
0.8
77
31.6
Minor 5ss
40.2
-1.1
3.1
58.6
45.9
Minor BPS
50.5
0.1
1.7
70.88
40.1

Associated Gene:

Gene:
SLC6A15
Ensembl Gene ID:
ENSAPLG00000015250
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015900
50212506 - 50243037
30532