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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_50221651_50222143_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
50221651 - 50222143
Intron Length:
493

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTA|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
TTCTTTTTTATA
Flanking Amino Acid:
LGGIGFASCVVCFFVALYYN
Intron Amino Acid Position:
150

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
0.9
83.4
29
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
90.6
0.91
0.6
87.5
23
Minor 5ss
48
-0.2
2.8
68.9
36.6
Minor BPS
59.5
0.29
1.6
69.68
37.1

Associated Gene:

Gene:
SLC6A15
Ensembl Gene ID:
ENSAPLG00000015250
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015900
50212506 - 50243037
30532