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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_50230965_50236041_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
50230965 - 50236041
Intron Length:
5077

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCATTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
AATTCTTCATTC
Flanking Amino Acid:
TFKVRKEILTVICCSVAFFI
Intron Amino Acid Position:
499

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.8
80.1
28.4
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
85.6
0.8
0.8
77.8
35.2
Minor 5ss
39.5
-1.2
2.9
49.4
41.4
Minor BPS
50.1
-0
1.7
62.11
37.6

Associated Gene:

Gene:
SLC6A15
Ensembl Gene ID:
ENSAPLG00000015250
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015900
50212506 - 50243037
30532