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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_50236202_50241154_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
50236202 - 50241154
Intron Length:
4953

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
ATTCCCTTCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
ATTCCCTTCACA
Flanking Amino Acid:
IAVTRIYGIEKFMEDLKDML
Intron Amino Acid Position:
552

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
80.4
26.8
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
78.8
0.65
0.8
72.6
31.5
Minor 5ss
33.7
-1.9
3.2
40.3
40.1
Minor BPS
69.4
0.6
1.7
79.53
36.3

Associated Gene:

Gene:
SLC6A15
Ensembl Gene ID:
ENSAPLG00000015250
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015900
50212506 - 50243037
30532