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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_50623199_50651311_R

Intron Information:

Intron Rank:
151620
Intron Class:
major
Intron Phase:
Intron Coordinates:
50623199 - 50651311
Intron Length:
28113

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTATTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TATTTCTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.8
79.4
28.9
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
90.7
0.92
0.7
89.4
25.6
Minor 5ss
38.1
-1.3
3.1
48.5
47.7
Minor BPS
70.7
0.73
1.5
84.59
36.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029133
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025317
50622585 - 50651344
28760