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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_50675842_50804531_R

Intron Information:

Intron Rank:
151621
Intron Class:
major
Intron Phase:
Intron Coordinates:
50675842 - 50804531
Intron Length:
128690

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTAAGAAGA
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTACAT
U12 Branch Point Sequence:
TACATGAGAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.8
0.47
1.1
64.7
41.3
Major BPS
67.6
0.44
1.2
75
40
Major PPT
95.8
1.03
0.5
96.6
11.7
Minor 5ss
34.8
-1.7
3
41.4
44.7
Minor BPS
36.9
-0.9
2.2
52.83
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029133
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036595
50675160 - 50806193
131034