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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_50887242_50888969_R

Intron Information:

Intron Rank:
151872
Intron Class:
major
Intron Phase:
Intron Coordinates:
50887242 - 50888969
Intron Length:
1728

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCCTTAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTCCCTTAAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.2
1.11
0.7
90.9
28.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
80
0.68
0.9
84.5
24
Minor 5ss
40.2
-1.1
3.1
58.6
45.9
Minor BPS
52.9
-0
2.2
70.01
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029256
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032604
50884833 - 50889225
4393