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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_50922743_50943495_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
50922743 - 50943495
Intron Length:
20753

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTACC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTGTACCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
TTTTTTGTACCA
Flanking Amino Acid:
YEMAAGLRPNYPAALMNLGA
Intron Amino Acid Position:
786

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
1
80.9
31.3
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
83.2
0.75
0.9
78
40.1
Minor 5ss
39.4
-1.2
2.7
51.9
37.5
Minor BPS
51.7
0.05
2.2
73.92
38.7

Associated Gene:

Gene:
TMTC2
Ensembl Gene ID:
ENSAPLG00000013866
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029969
50922142 - 51094719
172578
ENSAPLT00000024422
50922563 - 51174306
251744
ENSAPLT00000017268
50922142 - 51166166
244025
ENSAPLT00000036706
50922563 - 51098106
175544
ENSAPLT00000036215
50922142 - 51158905
236764