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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_50943092_50943495_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
50943092 - 50943495
Intron Length:
404

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTACC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCTGTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTAAATAATA
Flanking Amino Acid:
YEMAAGLRPNELVENVVVQQ
Intron Amino Acid Position:
786

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
1
80.9
31.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
87.5
0.84
0.8
88.9
28.1
Minor 5ss
39.4
-1.2
2.7
51.9
37.5
Minor BPS
53.4
0.1
2
74.97
35.9

Associated Gene:

Gene:
TMTC2
Ensembl Gene ID:
ENSAPLG00000013866
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014455
50943056 - 51166166
223111