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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_50943560_50950579_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
50943560 - 50950579
Intron Length:
7020

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTACC
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTCTAATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTCT
U12 Branch Point Sequence:
TCTCTTCTAATA
Flanking Amino Acid:
DVVFNAAHMLRQASLNEEAE
Intron Amino Acid Position:
764

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
1.1
80
33
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
76.5
0.6
0.8
73.6
30
Minor 5ss
33.4
-1.9
2.4
38.7
39
Minor BPS
52.8
0.08
1.6
64.52
36.3

Associated Gene:

Gene:
TMTC2
Ensembl Gene ID:
ENSAPLG00000013866
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024422
50922563 - 51174306
251744
ENSAPLT00000017268
50922142 - 51166166
244025
ENSAPLT00000036706
50922563 - 51098106
175544
ENSAPLT00000014455
50943056 - 51166166
223111
ENSAPLT00000036215
50922142 - 51158905
236764
ENSAPLT00000029969
50922142 - 51094719
172578