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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_50950695_50964181_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
50950695 - 50964181
Intron Length:
13487

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TACTCTATTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
TTTACATGAATT
Flanking Amino Acid:
PTKGNCYMHYGQFLLEESRL
Intron Amino Acid Position:
726

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
0.9
82.3
31.1
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
78.9
0.65
0.9
70.1
39.8
Minor 5ss
58.3
0.28
2.3
72.3
40
Minor BPS
62.1
0.46
1.8
83.38
37.1

Associated Gene:

Gene:
TMTC2
Ensembl Gene ID:
ENSAPLG00000013866
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017268
50922142 - 51166166
244025
ENSAPLT00000036706
50922563 - 51098106
175544
ENSAPLT00000014455
50943056 - 51166166
223111
ENSAPLT00000036215
50922142 - 51158905
236764
ENSAPLT00000029969
50922142 - 51094719
172578
ENSAPLT00000024422
50922563 - 51174306
251744