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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_50964264_50979390_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
50964264 - 50979390
Intron Length:
15127

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
TTTTTTTTTAAG
Flanking Amino Acid:
LTYGKLLALTGRKSEAEKYF
Intron Amino Acid Position:
699

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
76.7
29.7
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
88.4
0.86
0.9
94.6
18.5
Minor 5ss
34.5
-1.8
2.8
40.8
45.4
Minor BPS
56.3
0.05
1.8
67.7
39.9

Associated Gene:

Gene:
TMTC2
Ensembl Gene ID:
ENSAPLG00000013866
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014455
50943056 - 51166166
223111
ENSAPLT00000036215
50922142 - 51158905
236764
ENSAPLT00000029969
50922142 - 51094719
172578
ENSAPLT00000024422
50922563 - 51174306
251744
ENSAPLT00000017268
50922142 - 51166166
244025
ENSAPLT00000036706
50922563 - 51098106
175544