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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_50990595_50992268_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
50990595 - 50992268
Intron Length:
1674

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACACTT
5'SS Class:
major
3'SS Sequence:
TGTGTCTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TTTGTACTACCT
Flanking Amino Acid:
KLFHEQGHYEDALTVYKEAI
Intron Amino Acid Position:
632

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1.1
75.5
40.6
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
81
0.7
0.9
77.8
36.7
Minor 5ss
43.4
-0.7
3.2
65.6
45.4
Minor BPS
45.8
-0.2
2.2
73.17
43.7

Associated Gene:

Gene:
TMTC2
Ensembl Gene ID:
ENSAPLG00000013866
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024422
50922563 - 51174306
251744
ENSAPLT00000017268
50922142 - 51166166
244025
ENSAPLT00000036706
50922563 - 51098106
175544
ENSAPLT00000014455
50943056 - 51166166
223111
ENSAPLT00000036215
50922142 - 51158905
236764
ENSAPLT00000029969
50922142 - 51094719
172578