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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_51005381_51024482_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
51005381 - 51024482
Intron Length:
19102

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTTTT
5'SS Class:
strong_major
3'SS Sequence:
CTCCTCTTGACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAA
U12 Branch Point Sequence:
TCTTCCTGAATA
Flanking Amino Acid:
RSGIKVNPAKAWGNLGNVLK
Intron Amino Acid Position:
503

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.9
0.92
0.9
89.8
23.7
Major BPS
69.6
0.49
1
59.5
39
Major PPT
74.9
0.56
0.9
71.3
33.2
Minor 5ss
46.2
-0.4
2.8
67.4
43.6
Minor BPS
75.2
0.79
1.3
80.19
36

Associated Gene:

Gene:
TMTC2
Ensembl Gene ID:
ENSAPLG00000013866
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029969
50922142 - 51094719
172578
ENSAPLT00000024422
50922563 - 51174306
251744
ENSAPLT00000017268
50922142 - 51166166
244025
ENSAPLT00000036706
50922563 - 51098106
175544
ENSAPLT00000014455
50943056 - 51166166
223111
ENSAPLT00000036215
50922142 - 51158905
236764