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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_51073042_51097954_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
51073042 - 51097954
Intron Length:
24913

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCATGAA
5'SS Class:
major
3'SS Sequence:
TTGTCTTTTATAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAA
U12 Branch Point Sequence:
TTCTATTGAAAT
Flanking Amino Acid:
SSRLTWAAEISRAIKTNQDL
Intron Amino Acid Position:
51

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.9
0.54
1
67.2
33.5
Major BPS
79.4
0.73
0.9
69.6
37.5
Major PPT
84.5
0.78
0.7
80.3
31.8
Minor 5ss
24.8
-2.9
3.2
30.9
43.1
Minor BPS
54.8
0.23
1.7
75.14
41.3

Associated Gene:

Gene:
TMTC2
Ensembl Gene ID:
ENSAPLG00000013866
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036706
50922563 - 51098106
175544