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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_51236032_51237606_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
51236032 - 51237606
Intron Length:
1575

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTTTG
5'SS Class:
major
3'SS Sequence:
TATCATTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TGTACTTCAATC
Flanking Amino Acid:
LDRLCYLKEQDNIAWSGLVK
Intron Amino Acid Position:
492

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
73.3
38.2
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
82.8
0.74
0.9
76.3
37.1
Minor 5ss
50
0
2.4
66.9
44.3
Minor BPS
59.4
0.28
1.6
68.22
37.4

Associated Gene:

Gene:
METTL25
Ensembl Gene ID:
ENSAPLG00000007999
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017251
51235780 - 51296493
60714
ENSAPLT00000014711
51235945 - 51298886
62942
ENSAPLT00000008295
51235945 - 51298886
62942
ENSAPLT00000046071
51235945 - 51291245
55301
ENSAPLT00000040223
51235945 - 51296094
60150