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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_51237007_51237606_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
51237007 - 51237606
Intron Length:
600

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTTTG
5'SS Class:
major
3'SS Sequence:
ATTTATGTTACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATGAT
U12 Branch Point Sequence:
TACTCTGTAATG
Flanking Amino Acid:
LDRLCYLKEQCFY*
Intron Amino Acid Position:
433

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
73.3
38.2
Major BPS
76.8
0.67
1
66
40.9
Major PPT
79.8
0.67
1
72.9
41.4
Minor 5ss
50
0
2.4
66.9
44.3
Minor BPS
52
-0
2.1
59.68
43

Associated Gene:

Gene:
METTL25
Ensembl Gene ID:
ENSAPLG00000007999
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022893
51236841 - 51296041
59201