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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_51237679_51238294_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
51237679 - 51238294
Intron Length:
616

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAAAGTT
5'SS Class:
major
3'SS Sequence:
ATCTTTCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
TTTCCCCAGATC
Flanking Amino Acid:
RMNELEAFNMLKVVLAPCIE
Intron Amino Acid Position:
468

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1
74
34.5
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
87.2
0.84
0.7
85.1
29
Minor 5ss
35.9
-1.6
3.7
52.6
45.6
Minor BPS
48.8
-0.1
2
68.04
37.7

Associated Gene:

Gene:
METTL25
Ensembl Gene ID:
ENSAPLG00000007999
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014711
51235945 - 51298886
62942
ENSAPLT00000008295
51235945 - 51298886
62942
ENSAPLT00000040223
51235945 - 51296094
60150
ENSAPLT00000022893
51236841 - 51296041
59201
ENSAPLT00000017251
51235780 - 51296493
60714