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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_51237679_51251093_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
51237679 - 51251093
Intron Length:
13415

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTCGC
5'SS Class:
strong_major
3'SS Sequence:
ATCTTTCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
TTTCCCCAGATC
Flanking Amino Acid:
LKKLELDDSKLKVVLAPCIE
Intron Amino Acid Position:
384

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.8
72.2
39.5
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
87.2
0.84
0.7
85.1
29
Minor 5ss
29.1
-2.4
2.8
35.6
41
Minor BPS
48.8
-0.1
2
68.04
37.7

Associated Gene:

Gene:
METTL25
Ensembl Gene ID:
ENSAPLG00000007999
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046071
51235945 - 51291245
55301