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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_51253110_51254247_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
51253110 - 51254247
Intron Length:
1138

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
ATTGATTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTTATTGATT
Flanking Amino Acid:
ALERIAVGQMLPTDSLFYRA
Intron Amino Acid Position:
397

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
88.8
25
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
80.3
0.68
0.9
73.7
40.9
Minor 5ss
37.5
-1.4
2.8
48.3
41.8
Minor BPS
63.9
0.52
1.6
80.56
35

Associated Gene:

Gene:
METTL25
Ensembl Gene ID:
ENSAPLG00000007999
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014711
51235945 - 51298886
62942
ENSAPLT00000046071
51235945 - 51291245
55301
ENSAPLT00000022893
51236841 - 51296041
59201
ENSAPLT00000017251
51235780 - 51296493
60714