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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_51253110_51256860_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
51253110 - 51256860
Intron Length:
3751

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTATGGTTC
5'SS Class:
major
3'SS Sequence:
ATTGATTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTTATTGATT
Flanking Amino Acid:
GRNARMSACLLPTDSLFYRA
Intron Amino Acid Position:
387

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1
68.3
37.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
80.3
0.68
0.9
73.7
40.9
Minor 5ss
47.5
-0.2
3.1
63.7
42.5
Minor BPS
63.9
0.52
1.6
80.56
35

Associated Gene:

Gene:
METTL25
Ensembl Gene ID:
ENSAPLG00000007999
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040223
51235945 - 51296094
60150
ENSAPLT00000008295
51235945 - 51298886
62942