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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_51254278_51256860_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
51254278 - 51256860
Intron Length:
2583

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTATGGTTC
5'SS Class:
major
3'SS Sequence:
TTCACTTTTAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
AATTCCTTCACT
Flanking Amino Acid:
GRNARMSACLALERIAVGQM
Intron Amino Acid Position:
387

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1
68.3
37.3
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
73.6
0.53
1
74.1
34.3
Minor 5ss
47.5
-0.2
3.1
63.7
42.5
Minor BPS
74.6
0.86
1.7
87.87
37

Associated Gene:

Gene:
METTL25
Ensembl Gene ID:
ENSAPLG00000007999
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017251
51235780 - 51296493
60714
ENSAPLT00000014711
51235945 - 51298886
62942
ENSAPLT00000046071
51235945 - 51291245
55301
ENSAPLT00000022893
51236841 - 51296041
59201