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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_51281794_51284625_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
51281794 - 51284625
Intron Length:
2832

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTATGTTA
5'SS Class:
major
3'SS Sequence:
TTTTTCTTCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCTTTAT
U12 Branch Point Sequence:
TTTTTTTTTTCT
Flanking Amino Acid:
ELGDIITDLEDCIMVGLHTC
Intron Amino Acid Position:
307

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.3
0.46
1.2
69.7
36.9
Major BPS
66.1
0.4
1.3
59.6
46.8
Major PPT
88.6
0.87
0.6
89
20.1
Minor 5ss
36.7
-1.5
3.2
48
47.5
Minor BPS
45.5
-0.2
3.6
82.93
38.6

Associated Gene:

Gene:
METTL25
Ensembl Gene ID:
ENSAPLG00000007999
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017251
51235780 - 51296493
60714
ENSAPLT00000014711
51235945 - 51298886
62942
ENSAPLT00000046071
51235945 - 51291245
55301
ENSAPLT00000008295
51235945 - 51298886
62942
ENSAPLT00000040223
51235945 - 51296094
60150
ENSAPLT00000022893
51236841 - 51296041
59201