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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_51285256_51291144_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
51285256 - 51291144
Intron Length:
5889

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAAG
5'SS Class:
strong_major
3'SS Sequence:
CTCCATTGTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTCCAT
U12 Branch Point Sequence:
TTCCTCTCCATT
Flanking Amino Acid:
KIANYCGIKQVIDIGSGKGY
Intron Amino Acid Position:
97

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.7
33.7
Major BPS
64.7
0.37
1.3
74.7
40
Major PPT
68.4
0.41
0.9
61
39.9
Minor 5ss
32.8
-2
2.9
39.4
46.1
Minor BPS
47.8
-0
1.9
68.82
42.7

Associated Gene:

Gene:
METTL25
Ensembl Gene ID:
ENSAPLG00000007999
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022893
51236841 - 51296041
59201
ENSAPLT00000017251
51235780 - 51296493
60714
ENSAPLT00000014711
51235945 - 51298886
62942
ENSAPLT00000046071
51235945 - 51291245
55301
ENSAPLT00000008295
51235945 - 51298886
62942
ENSAPLT00000040223
51235945 - 51296094
60150