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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_51291246_51295876_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
51291246 - 51295876
Intron Length:
4631

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATATTTA
5'SS Class:
major
3'SS Sequence:
AAAAATGATACAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
ATTTTATTAATG
Flanking Amino Acid:
ALGGDNQGSTGIKTDEFMNN
Intron Amino Acid Position:
63

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.8
0.54
1
71.8
33.7
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
53
0.07
1.1
43.5
45.5
Minor 5ss
49.4
-0
2.5
63.4
43.4
Minor BPS
65.5
0.35
1.6
70.57
36.6

Associated Gene:

Gene:
METTL25
Ensembl Gene ID:
ENSAPLG00000007999
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017251
51235780 - 51296493
60714
ENSAPLT00000014711
51235945 - 51298886
62942
ENSAPLT00000008295
51235945 - 51298886
62942
ENSAPLT00000040223
51235945 - 51296094
60150
ENSAPLT00000022893
51236841 - 51296041
59201