Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_51296042_51296441_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

51296042 - 51296441

Intron Length:

400

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATT|GTAAGTCAA

5'SS Class:

major

3'SS Sequence:

CTTTTCCATACAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TTTTCCATACAG

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.3

0.6

1.1

68.9

37.3

Major BPS

96.5

1.15

0.6

34.2

Major PPT

82.5

0.73

0.8

77.2

30.6

Minor 5ss

36.1

-1.6

47.1

42.6

Minor BPS

54.2

-0

2.1

69.83

Associated Gene:

Gene:

METTL25

Ensembl Gene ID:

ENSAPLG00000007999

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017251

51235780 - 51296493

60714