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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_51307065_51308028_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
51307065 - 51308028
Intron Length:
964

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGATCTT
5'SS Class:
major
3'SS Sequence:
TGTCATCTATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GATTGAT
U12 Branch Point Sequence:
GATTGATAAACT
Flanking Amino Acid:
IKAERAKKKEDVLQKHLPLW
Intron Amino Acid Position:
177

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
75.1
41.1
Major BPS
70.8
0.52
1.2
63.4
44.3
Major PPT
68.7
0.42
0.9
67.5
38.7
Minor 5ss
38.1
-1.3
3.5
58.1
46.5
Minor BPS
47.8
-0
2.3
71.26
45

Associated Gene:

Gene:
CCDC59
Ensembl Gene ID:
ENSAPLG00000007839
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027413
51302446 - 51308293
5848