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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_51451699_51467641_R

Intron Information:

Intron Rank:
137120
Intron Class:
major
Intron Phase:
Intron Coordinates:
51451699 - 51467641
Intron Length:
15943

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTCATC
5'SS Class:
major
3'SS Sequence:
ACCTTTGTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TCAATCTTACTA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1.1
70.7
39.5
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
74.1
0.54
0.9
69
36.4
Minor 5ss
50.5
0.02
2.4
69.4
41.3
Minor BPS
52
0.06
1.6
60
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021267
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047449
51450176 - 51467811
17636