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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_51525677_51719202_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
51525677 - 51719202
Intron Length:
193526

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTAGC
5'SS Class:
strong_major
3'SS Sequence:
CTTTATTTCATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
TTAAACTTAACT
Flanking Amino Acid:
QRQLNSALPQEFAALTKELN
Intron Amino Acid Position:
84

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
77.9
36.9
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
80.4
0.68
0.8
76.1
32.2
Minor 5ss
42.2
-0.9
2.5
54.4
42.8
Minor BPS
73.5
0.82
1.5
87.33
37.3

Associated Gene:

Gene:
PPFIA2
Ensembl Gene ID:
ENSAPLG00000005353
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040788
51525426 - 51842357
316932