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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_51621792_51688129_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
51621792 - 51688129
Intron Length:
66338

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
ATCCCTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGAAT
U12 Branch Point Sequence:
AATCTTTGAATC
Flanking Amino Acid:
PNGTRFYTFQMTVAAGTSIE
Intron Amino Acid Position:
28

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
86.7
22.1
Major BPS
74.6
0.61
1.4
84
34.5
Major PPT
83.1
0.74
0.8
80.5
30.7
Minor 5ss
32
-2.1
3.1
39.9
46.1
Minor BPS
52.8
0.07
1.3
59.95
32.4

Associated Gene:

Gene:
PPFIA2
Ensembl Gene ID:
ENSAPLG00000005353
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005617
51621711 - 51842357
220647