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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_51777326_51779182_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
51777326 - 51779182
Intron Length:
1857

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCAGTAT
5'SS Class:
major
3'SS Sequence:
AATCTATCTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTGTTTTAATC
Flanking Amino Acid:
LANKEAILRQLEDKNRQLQE
Intron Amino Acid Position:
325

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.3
0.43
1
65.2
36.8
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
75.4
0.57
0.9
71.2
38.9
Minor 5ss
31.2
-2.1
3.6
46
49.3
Minor BPS
71.1
0.64
1.3
77
33.7

Associated Gene:

Gene:
PPFIA2
Ensembl Gene ID:
ENSAPLG00000005353
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005617
51621711 - 51842357
220647
ENSAPLT00000031657
51525426 - 51842357
316932
ENSAPLT00000020926
51525426 - 51842357
316932
ENSAPLT00000040913
51525426 - 51842357
316932
ENSAPLT00000020003
51525426 - 51842357
316932
ENSAPLT00000040788
51525426 - 51842357
316932
ENSAPLT00000019874
51525426 - 51842357
316932
ENSAPLT00000033226
51525426 - 51842357
316932