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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_51779318_51786840_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
51779318 - 51786840
Intron Length:
7523

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTGCTC
5'SS Class:
major
3'SS Sequence:
CTTGACTTGTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTTTCCTTGACT
Flanking Amino Acid:
LAQRIAALTKSDPTSSTSSD
Intron Amino Acid Position:
370

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.5
0.46
1.1
60.8
43.9
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
66.8
0.38
1
65.9
40.6
Minor 5ss
34.3
-1.8
3.6
50.7
45.9
Minor BPS
94.4
1.48
0.6
103.7
17.4

Associated Gene:

Gene:
PPFIA2
Ensembl Gene ID:
ENSAPLG00000005353
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040788
51525426 - 51842357
316932
ENSAPLT00000020926
51525426 - 51842357
316932
ENSAPLT00000020003
51525426 - 51842357
316932
ENSAPLT00000005617
51621711 - 51842357
220647
ENSAPLT00000040913
51525426 - 51842357
316932