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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_51786928_51787352_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
51786928 - 51787352
Intron Length:
425

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGTCCTA
5'SS Class:
major
3'SS Sequence:
CTATTTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TATTTTTTACAG
Flanking Amino Acid:
LQEMISIRRKAEERHGNIEE
Intron Amino Acid Position:
399

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.3
0.46
1.1
61.7
44.6
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
88.3
0.86
0.7
83.4
31.4
Minor 5ss
40.1
-1.1
3.4
56.2
48
Minor BPS
52.8
-0
1.8
60.98
41.1

Associated Gene:

Gene:
PPFIA2
Ensembl Gene ID:
ENSAPLG00000005353
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020003
51525426 - 51842357
316932
ENSAPLT00000005617
51621711 - 51842357
220647
ENSAPLT00000040913
51525426 - 51842357
316932
ENSAPLT00000040788
51525426 - 51842357
316932
ENSAPLT00000020926
51525426 - 51842357
316932