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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_51790842_51795452_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
51790842 - 51795452
Intron Length:
4611

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATATTT
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAG
U12 Branch Point Sequence:
ATTTCTTTGACT
Flanking Amino Acid:
AGSLIEPTLSRPHLDSSTEL
Intron Amino Acid Position:
522

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
83.5
28.8
Major BPS
64.7
0.37
1.5
63.7
43.9
Major PPT
92.2
0.95
0.6
91.3
20.3
Minor 5ss
43.9
-0.7
3.1
65.3
45.8
Minor BPS
83.8
1.15
0.9
93.38
27.4

Associated Gene:

Gene:
PPFIA2
Ensembl Gene ID:
ENSAPLG00000005353
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020926
51525426 - 51842357
316932
ENSAPLT00000040913
51525426 - 51842357
316932
ENSAPLT00000020003
51525426 - 51842357
316932
ENSAPLT00000040788
51525426 - 51842357
316932
ENSAPLT00000019874
51525426 - 51842357
316932
ENSAPLT00000033226
51525426 - 51842357
316932
ENSAPLT00000005617
51621711 - 51842357
220647
ENSAPLT00000031657
51525426 - 51842357
316932