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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_51799102_51801885_F

Intron Information:

Intron Rank:
17
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
51799102 - 51801885
Intron Length:
2784

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGAACC
5'SS Class:
strong_major
3'SS Sequence:
TCACCAATTTAAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TAATCAT
U12 Branch Point Sequence:
TTGTCACCAATT
Flanking Amino Acid:
EMDRMGVMTLPSDLRKHRRK
Intron Amino Acid Position:
721

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
74.3
34.1
Major BPS
80.4
0.76
1
80.3
31.8
Major PPT
59.7
0.22
1.1
61.5
37.8
Minor 5ss
34.9
-1.7
2.9
42.4
38.2
Minor BPS
48.6
-0
2.1
74.45
42.2

Associated Gene:

Gene:
PPFIA2
Ensembl Gene ID:
ENSAPLG00000005353
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020003
51525426 - 51842357
316932
ENSAPLT00000040788
51525426 - 51842357
316932
ENSAPLT00000019874
51525426 - 51842357
316932
ENSAPLT00000033226
51525426 - 51842357
316932
ENSAPLT00000005617
51621711 - 51842357
220647
ENSAPLT00000031657
51525426 - 51842357
316932
ENSAPLT00000020926
51525426 - 51842357
316932
ENSAPLT00000040913
51525426 - 51842357
316932