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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_51809461_51825177_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
51809461 - 51825177
Intron Length:
15717

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTACC
5'SS Class:
strong_major
3'SS Sequence:
GATCCATTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
GTGTATGTAACA
Flanking Amino Acid:
QAEKDRRLKKKHELLEEARR
Intron Amino Acid Position:
857

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
77.7
30.1
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
70.6
0.46
0.9
66.7
39.2
Minor 5ss
33.3
-1.9
2.7
38.5
32.5
Minor BPS
49
-0
2.2
64.71
41.8

Associated Gene:

Gene:
PPFIA2
Ensembl Gene ID:
ENSAPLG00000005353
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020003
51525426 - 51842357
316932
ENSAPLT00000040788
51525426 - 51842357
316932
ENSAPLT00000019874
51525426 - 51842357
316932
ENSAPLT00000033226
51525426 - 51842357
316932
ENSAPLT00000005617
51621711 - 51842357
220647
ENSAPLT00000031657
51525426 - 51842357
316932
ENSAPLT00000020926
51525426 - 51842357
316932
ENSAPLT00000040913
51525426 - 51842357
316932