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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_51825260_51826799_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
51825260 - 51826799
Intron Length:
1540

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCATT
5'SS Class:
strong_major
3'SS Sequence:
TTTATCTCAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTTAT
U12 Branch Point Sequence:
TTTATCTCAACA
Flanking Amino Acid:
DGPTVVAWLELWLGMPAWYV
Intron Amino Acid Position:
885

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.2
1.02
0.8
90.9
28.7
Major BPS
75.1
0.62
1
65.6
41
Major PPT
78.5
0.64
0.9
74.3
35.1
Minor 5ss
45.3
-0.5
2.9
66
45.2
Minor BPS
69.4
0.61
1.5
80.33
35.1

Associated Gene:

Gene:
PPFIA2
Ensembl Gene ID:
ENSAPLG00000005353
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020926
51525426 - 51842357
316932
ENSAPLT00000040913
51525426 - 51842357
316932
ENSAPLT00000020003
51525426 - 51842357
316932
ENSAPLT00000040788
51525426 - 51842357
316932
ENSAPLT00000019874
51525426 - 51842357
316932
ENSAPLT00000033226
51525426 - 51842357
316932
ENSAPLT00000005617
51621711 - 51842357
220647
ENSAPLT00000031657
51525426 - 51842357
316932