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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_51827001_51829183_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
51827001 - 51829183
Intron Length:
2183

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTGAGTCCT
5'SS Class:
major
3'SS Sequence:
GCCTTGTTCATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTGGAT
U12 Branch Point Sequence:
GCCTTGTTCATA
Flanking Amino Acid:
SPSAPPTSRTPSGNVWVTHE
Intron Amino Acid Position:
952

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.5
0.51
1
65.5
40.2
Major BPS
56.3
0.16
1.5
57.1
49.4
Major PPT
69.5
0.44
0.9
63.7
37
Minor 5ss
33.6
-1.9
3
48.4
41.1
Minor BPS
42.7
-0.5
2.3
50.34
42.1

Associated Gene:

Gene:
PPFIA2
Ensembl Gene ID:
ENSAPLG00000005353
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020926
51525426 - 51842357
316932
ENSAPLT00000020003
51525426 - 51842357
316932
ENSAPLT00000040913
51525426 - 51842357
316932
ENSAPLT00000019874
51525426 - 51842357
316932
ENSAPLT00000040788
51525426 - 51842357
316932
ENSAPLT00000005617
51621711 - 51842357
220647
ENSAPLT00000033226
51525426 - 51842357
316932