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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_51827001_51830677_F

Intron Information:

Intron Rank:
22
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
51827001 - 51830677
Intron Length:
3677

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTGAGTCCT
5'SS Class:
major
3'SS Sequence:
GCTGATAACACAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
GCTTTACTAATT
Flanking Amino Acid:
SPSAPPTSRTKESEEGSWAQ
Intron Amino Acid Position:
979

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.5
0.51
1
65.5
40.2
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
58.5
0.19
1
50.6
41.7
Minor 5ss
33.6
-1.9
3
48.4
41.1
Minor BPS
49.6
0.05
1.9
70.15
40.9

Associated Gene:

Gene:
PPFIA2
Ensembl Gene ID:
ENSAPLG00000005353
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031657
51525426 - 51842357
316932