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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_51836793_51838404_F

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
51836793 - 51838404
Intron Length:
1612

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTATGAAGT
5'SS Class:
major
3'SS Sequence:
TTGCAATTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGCAAT
U12 Branch Point Sequence:
TTTTCTTGCAAT
Flanking Amino Acid:
SGQSRKMATDVASSRLQRLD
Intron Amino Acid Position:
1209

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75
0.59
1
68.5
42.2
Major BPS
61.8
0.29
1.4
70.7
42.6
Major PPT
76.7
0.6
0.9
69.9
40.1
Minor 5ss
41.8
-0.9
2.9
58.5
45.8
Minor BPS
55.2
0.24
2
82.05
39.3

Associated Gene:

Gene:
PPFIA2
Ensembl Gene ID:
ENSAPLG00000005353
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020926
51525426 - 51842357
316932
ENSAPLT00000019874
51525426 - 51842357
316932
ENSAPLT00000005617
51621711 - 51842357
220647
ENSAPLT00000040788
51525426 - 51842357
316932