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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_51836793_51842168_F

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
51836793 - 51842168
Intron Length:
5376

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTATGAAGT
5'SS Class:
major
3'SS Sequence:
TTTTCTCCTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TACTAATTAATG
Flanking Amino Acid:
SGQSRKMATDDVISFFYFT*
Intron Amino Acid Position:
1240

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75
0.59
1
68.5
42.2
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
87
0.83
0.6
86.1
20.7
Minor 5ss
41.8
-0.9
2.9
58.5
45.8
Minor BPS
51.9
-0
1.9
58.86
42.7

Associated Gene:

Gene:
PPFIA2
Ensembl Gene ID:
ENSAPLG00000005353
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033226
51525426 - 51842357
316932
ENSAPLT00000031657
51525426 - 51842357
316932
ENSAPLT00000020003
51525426 - 51842357
316932
ENSAPLT00000040913
51525426 - 51842357
316932