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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_51850874_51851848_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
51850874 - 51851848
Intron Length:
975

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGAATT
5'SS Class:
major
3'SS Sequence:
ATGTTGTTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
TTTATTTGCATT
Flanking Amino Acid:
FQKLYFQKFPGYYDTMDAGY
Intron Amino Acid Position:
578

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1
78.7
35.4
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
76.4
0.59
0.9
74
41
Minor 5ss
41.6
-0.9
3.2
64.3
40.6
Minor BPS
48.2
-0
1.9
72.61
39

Associated Gene:

Gene:
ACSS3
Ensembl Gene ID:
ENSAPLG00000006860
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007120
51766938 - 51917762
150825