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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_51858792_51862065_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
51858792 - 51862065
Intron Length:
3274

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGACTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTTTACA
Flanking Amino Acid:
QAGKPVPGYNVMILDENKEP
Intron Amino Acid Position:
529

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1
68.2
42.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
98.8
1.1
0.5
95.2
16.3
Minor 5ss
35.7
-1.6
3.2
45.4
43.6
Minor BPS
71.2
0.66
1.5
82.45
31.9

Associated Gene:

Gene:
ACSS3
Ensembl Gene ID:
ENSAPLG00000006860
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007120
51766938 - 51917762
150825