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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_51877855_51881174_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
51877855 - 51881174
Intron Length:
3320

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAACTAA
5'SS Class:
major
3'SS Sequence:
ATTTTTTTTAAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTTAAAG
Flanking Amino Acid:
AALGKQYSLKRFRMLFVAGE
Intron Amino Acid Position:
462

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1
69.6
32.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
81.3
0.7
1
82.7
32.1
Minor 5ss
37.1
-1.5
3.1
46.2
49.1
Minor BPS
72.6
0.57
1.4
75.95
35.7

Associated Gene:

Gene:
ACSS3
Ensembl Gene ID:
ENSAPLG00000006860
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007120
51766938 - 51917762
150825