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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_51881327_51889506_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
51881327 - 51889506
Intron Length:
8180

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATGTG
5'SS Class:
strong_major
3'SS Sequence:
ATTCTCTCCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
ACGTTTTAAATT
Flanking Amino Acid:
LHGNPTVLYEGKPVGTPDAG
Intron Amino Acid Position:
412

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
0.9
78.6
35.9
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
74.8
0.56
0.8
69.7
30.4
Minor 5ss
35.7
-1.6
3.4
48.7
47.5
Minor BPS
52.1
0.14
1.6
64.59
41.3

Associated Gene:

Gene:
ACSS3
Ensembl Gene ID:
ENSAPLG00000006860
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007120
51766938 - 51917762
150825