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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_51889603_51889695_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
51889603 - 51889695
Intron Length:
93

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATTCTG
5'SS Class:
strong_major
3'SS Sequence:
TATTTCATTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTTATTT
Flanking Amino Acid:
SAVYGLKPGEVWWAASDLGW
Intron Amino Acid Position:
380

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
1
74.6
41.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
81
0.7
0.8
79.1
33.8
Minor 5ss
37.9
-1.4
3
50.1
46.1
Minor BPS
70.5
0.72
1.5
86.8
33.5

Associated Gene:

Gene:
ACSS3
Ensembl Gene ID:
ENSAPLG00000006860
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007120
51766938 - 51917762
150825